PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012518-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 412aa    MW: 47869.3 Da    PI: 7.6569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012518-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-17174220148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd ll ++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  AHYPO_012518-RA 174 KGQWTTEEDRLLNQLVERHGVRKWSQIAQLLN-GRIGKQCRERWHNHL 220
                      799*****************************.*************97 PP

2Myb_DNA-binding574.5e-18226268145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
  AHYPO_012518-RA 226 KDVWSEEEDRILIKAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 268
                      578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.057169224IPR017930Myb domain
SuperFamilySSF466892.26E-31172267IPR009057Homeodomain-like
SMARTSM007174.4E-15173222IPR001005SANT/Myb domain
PfamPF002494.5E-16174220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23175223IPR009057Homeodomain-like
CDDcd001672.66E-13177220No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22224273IPR009057Homeodomain-like
SMARTSM007171.7E-17225273IPR001005SANT/Myb domain
PROSITE profilePS5129421.648225275IPR017930Myb domain
PfamPF002491.6E-16226268IPR001005SANT/Myb domain
CDDcd001679.31E-13229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDFNAKYKQK FSSSLPLFFN EKNSKSRDER VFLEGASCYD LQEFHHVENF NMNLNVSSSN  60
TNLNPLFEIQ QNDHLDSYEN SPFGLFPNYD FYETKPFVNH VTNDGGLVPL LENFNQNGGV  120
LGNSHMINQG SQSYNYPLNY CDYGFRASDE DTSVTPKSMV RKQRRSRKKT SVVKGQWTTE  180
EDRLLNQLVE RHGVRKWSQI AQLLNGRIGK QCRERWHNHL RPDIKKDVWS EEEDRILIKA  240
HAEIGNKWAE IAKKLPGRTE NSIKNHWNAT KRRQFSKRKC RAKYPRKSSL LEEYIKSLTP  300
ETINAGCRKK PQSSIKNEAN SSKQQIESSN SSSSDQIRLE YDFGEVPEFN FSAQMFEEGS  360
LDSILDCYDD PQHGHKFNEV MNHSHDDLSS LRQFGEKREL DLMEMINQVN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-431722742104C-Myb DNA-Binding Domain
1msf_C6e-431722742104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6501068e-32HQ650106.1 Gossypium hirsutum clone BAC 067L14, complete sequence.
GenBankJX6150978e-32JX615097.1 Gossypium hirsutum clone NBRI_GE58911 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678927.11e-165PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L22e-77MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0J8CF351e-165A0A0J8CF35_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-76myb domain protein 98